Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs16981648 chr19:9804424 A/C 4.27E-6 503 31.42 33.53 32.9 KM Plot
THCA rs17005384 chr3:69181552 A/G 3.26E-6 503 14.62 30.43 32.07 KM Plot
THCA rs17061930 chr6:133223799 T/C 2.03E-6 497 31.42 33.7 30.22 KM Plot
THCA rs17069507 chr3:63924956 A/G 1.35E-9 494 31.7 31.47 29.53 KM Plot
THCA rs17098954 chr14:62082559 C/T 3.81E-5 500 31.42 38.6 11.03 KM Plot
THCA rs17106969 chr11:107327922 A/T 3.66E-11 502 31.7 29.73 33.7 KM Plot
THCA rs17126531 chr14:23564766 C/G 5.55E-15 497 31.7 31.93 12.97 KM Plot
THCA rs1716213 chr12:31751793 T/C 5.38E-6 498 31.7 31.03 17.13 KM Plot
THCA rs17195037 chr8:58109492 C/T 1.33E-15 492 31.37 37.97 32.1 KM Plot
THCA rs17304611 chr19:33373540 A/G 2.29E-5 503 31.43 34.43 32.93 KM Plot
THCA rs17337746 chr3:139268669 T/C 4.83E-5 500 31.53 33.97 19.32 KM Plot
THCA rs17397112 chr3:139262623 T/A 4.69E-5 502 31.5 33.8 19.32 KM Plot
THCA rs1740610 chr1:41502680 C/A 1.22E-7 502 27.33 30.48 31.92 KM Plot
THCA rs1740615 chr1:41538516 C/T 1.33E-7 500 27.33 30.48 31.92 KM Plot
THCA rs17435612 chr8:4987896 C/T 0.000121 503 24.2 35.3 31 KM Plot